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Biophysics and Soft Matter Seminar
High-Throughput In Situ Photolithographic Synthesis of Nucleic Acid Microarrays for Aptamer Screening and Digital Data Storage
Tadija Kekic, Lund University Solid State Physics
Location: P8445.2
Synopsis
The gold standard in chemical synthesis of nucleic acids鈥擠NA and RNA鈥攖ypically yields only one oligonucleotide sequence per run, followed by labor-intensive downstream analysis. This double bottleneck is partially addressed by microarray technology, which enables rapid, discrete analysis of thousands of pre-synthesized oligonucleotides. However, these oligonucleotides are still produced in a low-throughput manner and then immobilized on individual surface-bound features, forming structured libraries, or microarrays, that can be analyzed simultaneously. 鹿, 虏
To overcome the bottleneck of synthesis itself, spatially controlled in situ synthesis has been developed. Here, photolithographic synthesis stands out as the most robust鈥攁nd currently the only high-throughput鈥攁pproach for fabricating both DNA and RNA oligonucleotides. 虏, 鲁
This talk will showcase how we advanced the photolithographic synthesis of RNA and how it can be harnessed to generate highly reproducible, high-density oligonucleotide microarrays. It will cover applications in systematic RNA aptamer screening 虏, in probing sequence-dependence of fluorescence dyes 鈦, 鈦, and in storage of digital data through complementary hybridization. 鲁, 鈦
- J. Lietard, M. M. Somoza, Spotting, Transcription and In Situ Synthesis: Three Routes for the Fabrication of RNA Microarrays. CSBJ 17, 862-68, (2019). DOI: 10.1016/j.csbj.2019.06.004.
- T. Kekic et al., Accelerated, high-quality photolithographic synthesis of RNA microarrays in situ. Sci. Adv.10, eado6762, (2024). DOI:10.1126/sciadv.ado6762
- T. Kekic, J. Lietard, A Canvas of Spatially Arranged DNA Strands that Can Produce 24-bit Color Depth. JACS 145, 22293-97, (2023). DOI: 10.1021/jacs.3c06500.
- T. Kekic, J. Lietard, An 8-bit monochrome palette of fluorescent nucleic acid sequences for DNA-based painting. Nanoscale 14,17528-33, (2022). DOI: 10.1039/d2nr05269e.
- T. Kekic, J. Lietard, Sequence-dependence of Cy3 and Cy5 dyes in 3使 terminally-labeled single-stranded DNA, Sci. Rep. 12,14803, (2022). DOI: 10.1038/s41598-022-19069-9